Their article also described the distribution of flagellar systems in 43 actinobacterial genomes, as well as in four actinomycetes that possessed a flagellin gene (e.g. Nocardioides sp. JS614, Leifsonia xyli, Acidothermus cellulolyticus, and Kineococcus radiotolerans). Analysis Metformin solubility dmso of these four actinomycete genomes revealed that there were no genes encoding FlgF (proximal

rod) and FlgG (distal rod), and that the flagellar system may be incomplete (Snyder et al., 2009). However, all species belonging to the genus Kineococcus are motile, and polar flagella have been observed in K. radiotolerans SRS30216 (Phillips et al., 2002). Similarly, several species belonging to the genera Nocardioides and Leifsonia were observed to have motile cells and flagella (Cho et al., 2010; Madhaiyan et al., 2010). Interestingly, whole genome sequence data from A. cellulolyticus 11B revealed the presence Obeticholic Acid supplier of a flagellar system, even though this actinomycete species was previously reported to be non-motile (Barabote et al., 2009).

In addition, genes for the flagellar system in Salinispora tropica, CNB-440, which belongs to the family Micromonosporaceae, have not yet been identified (Udwary et al., 2007). Taken together, these findings indicate that the distribution and diversity of flagellar genes in actinomycetes is unclear (Snyder et al., 2009). This study therefore sought to characterize the flagellin-encoding gene in Actinoplanes species as a representative of motile actinomycetes. In this article, we amplified, sequenced and analyzed flagellin gene sequences from selected Actinoplanes type strains. In addition, structural predictions were performed using the SWISS-MODEL server

(Schwede et al., 2003), with a template from a known flagellin protein from Salmonella typhimurium (Maki-Yonekura et al., 2010). Finally, phylogenetic analysis based on the N-terminal region of the flagellin gene was conducted and the obtained phylogeny was discussed. DNA from 21 Actinoplanes strains preserved at NITE Biological Resource Center (NBRC) was extracted for amplification and sequencing of the flagellin gene (Table 1). All of the tested strains were grown in YG broth (yeast extract, 10 g L−1; glucose 10 g L−1; pH 7.0) for 7 days at Astemizole 30 °C. Cells were recovered by centrifugation (1600 g, 10 min) and washed twice with 0.5 M EDTA. Genomic DNA was extracted as described by Saito & Miura (1963) with minor modifications. Isolated DNAs were stored at −20 °C until analysis. To amplify the flagellin gene from Actinoplanes strains, the degenerate PCR primers 5F_Fla (5′-GTC TYC GCA TCA ACC AGA ACA TCG-3′) and 1219R_Fla (5′-GCA CGC CCT GCG RGG MCT GGT TCG CG-3′), corresponding to N- and C-terminal regions of the flagellin gene, respectively, were used. The primers were designed by comparing flagellin gene sequences derived from the genome sequence of Actinoplanes missouriensis NBRC 102363T (AB600179), Nocardioides sp. JS614 (CP000509 REGION: 814334..815251), and K.