jgi.doe.gov/) (Position: scaffold_80:317485–317760) and the entire A3aPro sequence from P. sojae was submitted to GenBank

(accession no. JX118829). Thus, based on the A3aPro sequencing information, we have identified a novel transposon-like DNA element A3aPro in many Phytophthora genomes that could provide a potential target for plant disease diagnosis. In this study, we developed a LAMP assay for P. sojae based on a special identifiable target A3aPro and demonstrated that it was specific and efficient. Phytophthora sojae isolates were obtained from diseased soybean stems collected from various provinces CH5424802 in China from 2002 to 2011. All tested P. sojae isolates were isolated using a leaf disk-baiting method from learn more diseased soybean plots (Jinhuo & Anderson, 1998). Using the same method, additional P. sojae isolates were baited from soybean residues and soil carried by soybeans imported from the USA, Brazil, Argentina and Canada. Thirteen known races (R2, R3, R6, R7, R8, R12, R14, R17, R19, R20, R28, R31, and P7071) of P. sojae were provided by B. Tyler and J. Peng. The P. sojae isolates, as well as isolates of Phytophthora spp., Pythium spp., Fusarium spp., and various other pathogens used in this study, are maintained in a collection in the Department of Plant Pathology, Nanjing Agricultural University, China, and are listed in Table

S1. Phytophthora isolates were cultured in tomato juice medium (Zheng, 1995) (L−1, 200 mL tomato juice, 0.1 g CaCO3 and 15 g agar mixed with sterile distilled water, and autoclaved at 120 °C for 20 min). Mycelia of each Phytophthora and Pythium isolate were obtained by growing the isolates in tomato juice broth at 18–25 °C (temperature-dependent isolates) for at least 3 days. Mycelia of the other fungi were grown in potato dextrose broth (Erwin et al., 1996). The mycelia

were harvested by filtration and frozen at −20 °C. Mycelia DNA was isolated using the DNAsecure Plant Kit (TIANGEN) according to the manufacturer’s protocol. DNA concentrations were determined spectrophotometrically or by quantitation on 1% agarose gels stained with ethidium bromide in comparison with commercially obtained standards and stored at −20 °C. A set of four species-specific SPTLC1 LAMP primers was designed based on the P. sojae identifiable target A3aPro. Briefly, using the A3aPro sequence of P. sojae as a bait to do a blastn search did not showed any similarity with other sequenced strains of Phytophthora infestans, Phytophthora ramorum and Hylaperonospora parasitica. Then we obtained similar-A3aPro sequences in the genome databases for P. infestans, P. ramorum and H. parasitica. Phytophthora infestans DNA sequence was available from the Broad Institute (http://www.broad.mit.edu/) (Position: supercontig_1.1849:1900–2350); P. ramorum DNA sequence was available from the JGI (http://www.jgi.doe.gov/) (Position: scaffold_1220:1–342); H. parasitica genome sequence was available from http://vmd.vbi.vt.