In this study, we wished to characterize the role of TLR4 in the natural

history of sporadic colonic neoplasia. The objective was to identify the prevalence of altered TLR4 RNA expression and tissue localization in sporadic neoplasia, and to determine the relationship between TLR4 expression and survival in CRC. We combined the strengths of transcriptomic array data and immunohistochemical (IHC) staining. Analysis of arrayed data offers a method by which to efficiently query the genomic and protein expression within a given tissue offering insight into the influence of gene expression on patient phenotypes. In an effort to establish the influence of TLR4 on CRC behavior, eFT-508 we drew upon genomic data sets and validated RNA expression profiles with immunofluorescent (IF) staining for theTLR4 protein from tissue microarrays (TMAs) obtained from the National Cancer Institute (NCI). Our results demonstrate that TLR4 is expressed in adenomas and CRCs. Up to 47% of sporadic colon cancers express TLR4 protein with meaningful impact on survival and other SC79 chemical structure clinical indices. Expression in tumors is localized predominantly in the stromal compartment, with a notable increase

in pericryptal fibroblasts in the lamina propria. Methods Gene expression profiling Gene expression arrays were identified by search of the Gene Expression Omnibus (GEO) database [10]. Data sets were searched using the terms “colon cancer”, “colorectal cancer”, “rectal cancer”, “colon polyp”, and “colorectal neoplasia”. Searches were limited to expression PF-6463922 cost data (messenger RNA). Data sets were included if they contained paired human samples ≥16 subjects, included accompanying clinical data, and had annotation files indicating TLR4. Studies were excluded if they used only animal or cell line models. Keyword search (November 2011) revealed 170 CRC data sets. 97 pertained to human CRC, and learn more 64 consisted of greater than or equal to 16 samples. 29 contained information on TLR4 expression with clinical characteristics

of interest, including demographics, histologic progression of dysplasia, polyp size, histology, initial CRC stage, tumor grade, metastasis, survival (overall [OS], disease specific [DSS], disease free [DFS]), recurrence, and microsatellite instability (MSI).We then reorganized data by pairs of probes to observe the influence of varying transcript length on outcomes. Eleven studies were ultimately selected. A second GEO search was performed to identify series that stratified expression data by tissue compartment (ie, epithelium vs stroma) to further clarify TLR4 localization. Tissue microarrays TMA slides were provided by the NCI Cancer Diagnosis Program (CDP). Other investigators may have received slides from these same array blocks. The CDP arranged 279 colon tissue specimens with 182 CRCs of mixed stages and matched normal tissues on two slides [11].